PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463776.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 423aa    MW: 45877.5 Da    PI: 6.7237
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.15.7e-3329150389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceae 76 
                     g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a++ai+el ++                     +          
  XP_016463776.1  29 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQAAIDELEELppwkpttgpianstnfdqekkK---------- 113
                     89*************************************************************9888876655433333222220.......... PP

             TCP  77 sssssasnsssg...........................k 89 
                      ++++ +++  +                            
  XP_016463776.1 114 -QKENFDTQ--QndvnvsiggssskramimlgnesearvL 150
                     .11111111..11233444444333444444433322220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2929166IPR005333Transcription factor, TCP
PROSITE profilePS5136933.6213088IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGTSSKFGLR NSGGEIVEVQ GGHIIRSIGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AQAAIDELEE LPPWKPTTGP IANSTNFDQE KKKQKENFDT  120
QQNDVNVSIG GSSSKRAMIM LGNESEARVL HQTNSGNSSG DNANASFLPQ SLDSDTIADT  180
IKSFFPVGCS NESTSSSAMQ FQSFQEHNLL SRTSSHSQDL RLSLQSFQDP ILLQQQAQHH  240
NNPRNHTEEE QTHFQASNFF TGSTPFGFDA SGWSVSEHQQ QPVEQRPAAA RAGGDSTGIA  300
LCGGAVAGAA GGYLFNSPPA PPLLQQLFGQ NQFFSQRGPL QSSYSPSIRA WIDPSAIAIA  360
TADPIHHHQA MLPMYSASIS GIGFASELGG FSGFRIPARI QGEIEEHDGI SDKPSSASSD  420
SRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-85HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630327.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_009630328.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463776.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463777.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR54e-99TCP4_ARATH; Transcription factor TCP4
TrEMBLM1B8S20.0M1B8S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000397860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-85TCP family protein